Cran packages. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via If you want to double-check that the package you have downloaded matches the package distributed by CRAN, you can compare the md5sum of the . Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. This document gives some additional hints for a useful CRAN submission, especially for new submissions. sp: Classes and Methods for Spatial Data. ranger: A Fast Implementation of Random Forests. ggraph is an extension of the ggplot2 API tailored to graph visualizations and provides the same flexible We would like to show you a description here but the site won’t allow us. Unless there are good reasons, packages submitted to CRAN are expected to pass R CMD check --as-cran, and you will be asked to fix and resubmit your package if it We would like to show you a description here but the site won’t allow us. Does R run under my version of Windows? How do I update packages in my previous version of R? CRAN - Package data. nlme: Linear and Nonlinear Mixed Effects Models. Raster methods include local, focal, global, zonal and geometric operations. pacman conveniently wraps library and package related functions and names them in an intuitive and consistent fashion. Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling. CRAN - Package terra. Projection code and larger maps are in separate packages ('mapproj' and 'mapdata'). rstan: R Interface to Stan. The package permits to run consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences) dataset If the package(s) is/are not installed, then the package(s) will be installed along with the required dependency(ies). Extract Text from Microsoft Word Documents. The views are intended to have a sharp focus so that it is sufficiently clear which packages should be included (or CRAN - Package tidyr. In the end, your package will become more user-friendly and accessible for a larger share of users. Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species. Version: 3. 0 or later ‘c2d4u’ repository: vegan: Community Ecology Package. Get 5000+ CRAN Packages. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. CRAN - Package ranger. devtools: Tools to Make Developing R Packages Easier. Ordination methods, diversity analysis and other functions for community and vegetation ecologists. Many developers of R packages for science are themselves scientists. CRAN - Package rms. The predict and interpolate methods Feb 14, 2024 · Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models. 3. Functions for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization. Package ‘AccelStab’ was removed from the CRAN repository. Through the 'installr' package you can automate the updating of R (on Windows, using updateR ()) and install new software. Depends: R (≥ 3. Currently, the CRAN package repository features 20614 available packages. Confidence intervals can be computed for (p)AUC or ROC curves. If other drivers are needed, you need to either use other conversion utilities or install these packages from the source against a version of GDAL with the May 25, 2021 · 2021-05-25. Table of available packages, sorted by name. Supports custom themes via a 'CSS'-like language. table. Display of maps. x). Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. How to Install an R Package Installing R Packages From CRAN. The grammar of graphics as implemented in ggplot2 is a poor fit for graph and network visualizations due to its reliance on tabular data input. Fit linear and generalized linear mixed-effects models. rms: Regression Modeling Strategies. Currently, the CRAN package repository features 20619 available packages. gt: Easily Create Presentation-Ready Display Tables. Convert R Markdown documents into a variety of formats. A dependency management toolkit for R. by Joseph Rickert. pacman: Package Management Tool. lme4: Linear Mixed-Effects Models using 'Eigen' and S4. CRAN - Package odbc. js' inspired by the grammar of graphics. 'rms' is a collection of functions that assist with and streamline modeling. Data from genome-wide association studies can be analyzed efficiently. lcmm: Extended Mixed Models Using Latent Classes and Latent Processes. You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details. packages works as it does on other Unix-alike systems, but there is an additional type mac. Please use the CRAN mirror nearest to you to minimize network load. odbc: Connect to ODBC Compatible Databases (using the DBI Interface) A DBI-compatible interface to ODBC databases. biomod2: Ensemble Platform for Species Distribution Modeling. binary (available for the CRAN distribution but not when compiling R from source) which can be passed to install. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. Version: 1. In classic R IDE go to Packages → Install package(s), select a mirror and install the package. 0. Offers a natural and flexible syntax, for faster development. rlang: Functions for Base Types and Core R and 'Tidyverse' Features. Solve optimization problems using an R interface to NLopt. Build display tables from tabular data with an easy-to-use set of functions. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. They provide tools to automatically install all packages from each view. A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation. g. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). It seeks to combine functionality from lower level functions which can speed up workflow. With its progressive approach, we can construct display tables with a cohesive set of table parts. Tools to build R and R packages. Here are my “Top 40” selections from the two hundred packages that arrived in thirteen categories: Computational Methods, Data, Genomics, Linguistics, Machine Learning, Mathematics, Medicine, Networks, Science, Sports, Statistics, Utilities, Visualization. Submitting to CRAN . NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. This is what you want to build your own packages on Windows, or to build R itself. Visible Vowels: Visualization of Vowel Variation. 4. CRAN - Package dismo. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery On macOS install. Version: Mar 15, 2023 · R is a free software environment for statistical computing and graphics. Please do not submit binaries to CRAN. Formerly available versions can be obtained from the archive . How you can install an R package will depend on where it is located. Version: CRAN - Package installr. Superlatively Fast Fuzzy Joins. Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models. CRAN - Package survey. Several packages aim to handle time-based tibbles: tsibble provides tidy temporal data frames and associated tools; tsbox contains tools for working with and coercing between many time series classes including tsibble, ts, xts, zoo and more. Sep 26, 2022 · August 2022: "Top 40" New CRAN Packages. Packages hdi and stabs implement stability selection for a range of models, hdi also offers other inference procedures in high igraph: Network Analysis and Visualization. CRAN - Package stringr. Binaries of contributed CRAN packages for outdated versions of R (for R < 4. CRAN - Package maps. Installing the CRAN packages with the menu Alternatively, you can install R packages from the menu. Priority: recommended. maps: Draw Geographical Maps. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more. In particular, multivariate distributions as well as copulas are available in contributed packages. 'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data CRAN - Package rstan. devtools::install_version() installs a stated Jan 1, 2015 · CRAN - Package lme4. 'versions' fits in the narrow gap between the 'devtools' install_version() function and the 'checkpoint' package. tidyverse: Easily Install and Load the 'Tidyverse'. dismo: Species Distribution Modeling. Software installation is initiated through a GUI (just run . Together, these tools can help make your projects more isolated, portable, and reproducible. The most common way is to use the CRAN repository, then you just need the name of the package and use the command install. nloptr: R Interface to NLopt. Tools to more conveniently perform tasks associated with add-on packages. The models and their components are represented using S4 classes and methods. CRAN - Package sp. 0) Imports: Jul 10, 2018 · Metadata calculation of the R packages is hosted in the Artifactory local repositories. Binaries of contributed CRAN packages (for R >= 4. frame'. They provide tools to automatically install all CRAN - Package forecast. CRAN - Package pROC. To download R, please choose your preferred CRAN mirror. CRAN checks: harmony results: Documentation: Reference manual: harmony. Routines for simple graphs and network analysis. 3 was the last version of R to support 32-bit Windows). 1. Seurat: Tools for Single Cell Genomics. Installs specified versions of R packages hosted on CRAN and provides functions to list available versions and the versions of currently installed packages. Here are my “Top 40” picks in thirteen categories: “Computational Methods, Data, Epidemiology, Genomics, Insurance, Machine Learning, Mathematics, Medicine, Pharmaceutical Applications, Statistics, Time Series, Utilities, and Visualization. User-facing R functions are provided to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. A set of estimators for models and (robust) covariance matrices, and tests for panel data econometrics, including within/fixed effects, random effects, between, first-difference, nested random effects as well as instrumental-variable (IV) and Hausman-Taylor-style models, panel generalized method of moments (GMM) and general FGLS models, mean Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques. installr: Using R to Install Stuff on Windows OS (Such As: R, 'Rtools', 'RStudio', 'Git', and More!) R is great for installing software. terra: Spatial Data Analysis. CRAN - Package gbm. An implementation of extensions to Freund and Schapire's AdaBoost algorithm and Friedman's gradient boosting machine. readr: Read Rectangular Text Data. A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. Makes it incredibly easy to build interactive web applications with R. Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). Depends: Apr 5, 2023 · The bin/windows directory of a CRAN site contains binaries for a base distribution and add-on packages from CRAN to run on 64-bit versions of Windows 7 and later on x86_64 chips (R 4. Without citations, most scientists don’t get credit for their work. CRAN - Package tidyverse. 8. Apr 5, 2023 · Note, however, that the package is only useful in combination with at least one of the commercial optimizers Gurobi (R-package gurobi delivered with the software) or Mosek (R-package Rmosek downloadable from the vendor (an outdated version is on CRAN)). Here are my “Top 40” picks in twelve categories: Computational Methods, Data, Genomics, Machine Learning, Mathematics, Medicine, Networks, Operations Research, Statistics, Time Series, Utilities, and Visualization. Here are my “Top 40” selections in thirteen categories: Actuarial Statistics, Archaeology, Computational Methods, Ecology, Genomics, Mathematics, Medicine, Machine Learning, Science, Statistics, Time Series, Utilities, Visualization. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages. All function and argument names (and positions) are consistent, all functions deal with "NA"'s and zero length vectors in the same way, and the output from one We would like to show you a description here but the site won’t allow us. 5. ggraph: An Implementation of Grammar of Graphics for Graphs and Networks. In the Tree Browser, select your virtual CRAN repository and scroll down to find and select the package you want to inspect. The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. 2. CRAN - Package rlang. Creates classes with reference semantics, similar to R's built-in reference classes. tidyr: Tidy Messy Data. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Ensembles of classification, regression, survival and probability prediction trees are supported. This function pulls source or binary packages from the Posit/RStudio-sponsored CRAN mirror. Feb 14, 2024 · Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models. Backends are modular such that any Nov 16, 2021 · It’s extremely important to cite both R and R packages for several reasons: Developer Credit. renv: Project Environments. Version: Mar 11, 2019 · CRAN - Package pacman. Checklist for CRAN submissions. Fast aggregation of large data (e. packages in order to download and install binary packages from a suitable repository. Please always read the CRAN policies first. CRAN - Package readr. Submitting a package to CRAN is substantially more work than making it available on GitHub. 3. The metadata is displayed in the CRAN Info tab. table: Extension of 'data. (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. They give a brief overview of the included packages which can also be automatically installed using the ctv package. Methods for vector data include geometric operations such as intersect and buffer. 1-164. 0) Imports: The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. stringr: Simple, Consistent Wrappers for Common String Operations. Table values can be formatted using any of the included formatting functions. Utility functions are provided, e. exe to the fingerprint on the master server. views("FunctionalData") installs all packages that are not yet installed and up-to-date. CRAN task views aim to provide guidance which packages on CRAN are relevant for tasks related to a certain topic. 5. For most of the classical distributions, base R provides probability distribution functions (p), density functions (d), quantile functions (q), and random number generation (r). Jul 20, 2023 · Package nestedcv provides nested cross-validation for glmnet and caret models. Version: 2. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame. data. CRAN - Package Seurat. This is what you want to install R for the first time. A fast implementation of Random Forests, particularly suited for high dimensional data. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue". A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly. Jul 15, 2020 · Submit to CRAN . This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort. Please use the canonical form https://CRAN For more detailed instructions, including details on administration and maintenance of R Packages, see the full README. So, for publicly available packages, this means to what repository it belongs. Package dae provides various utility functions around experimental design and manipulating R CRAN - Package gt. survey: Analysis of Complex Survey Samples. It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes. Misc functions for training and plotting classification and regression models. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. To “submit” a package to CRAN, check that your submission meets the CRAN Repository Policy and then use the web form. It, however, forces you to test your package on various operating systems and ensures that it is stable across all these systems. Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation Package includes a standalone Harmony function and interfaces to external frameworks. Frequently asked questions. These tools can be used to help make R projects and packages more reproducible. forecast: Forecasting Functions for Time Series and Linear Models. Archived on 2024-02-28 as issues were not corrected in time. A summary of the most recent check results can be obtained from the check results archive. See the CRAN Task View Initiative for more details. A New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics. Lastly, the chosen package(s) is/are loaded. Aug 8, 2023 · Search for R packages on CRAN directly from the R console, based on the packages' titles, short and long descriptions, or other fields. Tools to help to create tidy data, where each column is a variable, each row is an observation, and each cell contains a single value. The function 'load_package' simply loads the provided package(s). Feb 21, 2024 · Important note: CRAN offers binary versions of packages sf, terra, and vapour for Windows and macOS, that contain specific GDAL version with a subset of possible data source drivers. Includes regression methods for least squares, absolute loss, t-distribution loss, quantile regression, logistic, multinomial logistic, Poisson, Cox proportional randomForest: Breiman and Cutler's Random Forests for Classification and Regression Feb 28, 2023 · 2023-02-28. Currently, 44 views are available. packages CRAN - Package lcmm. It also contains functions for binary and ordinal logistic CRAN - Package ggraph. Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Deploy R Sources and Binaries Directly in the UI. Version: The package xts is based on zoo and provides uniform handling of R’s different time-based data classes. One hundred ninety-four new package made it to CRAN in August. CRAN - Package nlme. If you don't want to search from the R console, use the comfortable R Studio add-in. Collection of package development tools. We would like to show you a description here but the site won’t allow us. It support ANSI colors and text styles as well. One hundred sixty-five new packages made it to CRAN in January. 6. glmnet: Lasso and Elastic-Net Regularized Generalized Linear Models. Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. Create Interactive Web Maps Using 'The National Map' Services. Beyond this basic functionality, many CRAN packages provide additional useful distributions. CRAN checks: devtools results: Documentation: Reference manual: shiny: Web Application Framework for R. CRAN - Package forecast. gbm: Generalized Boosted Regression Models. Please use the canonical Mar 21, 2022 · The packages from this task view can be installed automatically using the ctv package. Combine multiple keywords with logical operators ('and', 'or'), view detailed information on any package and keep track of the latest package contributions to CRAN. 0) A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. CRAN Task Views aim to provide some guidance which packages on CRAN are relevant for tasks related to a certain topic. Mar 28, 2022 · February was a good month for new R packages on CRAN. Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model, multiple-response Gaussian, and the grouped multinomial regression; see < doi:10. For example, ctv::install. views("FunctionalData", coreOnly = TRUE) installs all the core packages or ctv::update. Fit and compare Gaussian linear and nonlinear mixed-effects models. In RStudio go to Tools → Install Packages and in the Install from option select Repository (CRAN) and then specify the packages you want. Functions for ROC analysis and other visualisation techniques for comparing candidate classifiers are available from package ROCR. pROC: Display and Analyze ROC Curves. They may be developing packages in their own time, or are trying to fit it into a busy schedule. For older R releases, see the corresponding README. Table of available packages, sorted by date of publication. Version: CRAN - Package biomod2. CRAN - Package AccelStab. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS. Run this command (as root or by prefixing sudo) to add the current R 4. CRAN is a network of ftp and web servers around the world that store identical, up-to-date, versions of code and documentation for R. The Windows version of R was created by Robert Gentleman and Guido Masarotto; Brian Ripley and Duncan We would like to show you a description here but the site won’t allow us. pdf : CRAN - Package renv. Feb 29, 2024 · CRAN is a network of ftp and web servers around the world that store identical, up-to-date, versions of code and documentation for R. CRAN - Package nloptr. One hundred seventy-nine new packages made it to CRAN in April. jq ar ov pg af wt tv yf dn ia